PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G222700.1
Common NameB456_010G222700, LOC105771608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 263aa    MW: 28599.4 Da    PI: 6.9996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G222700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002180102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Gorai.010G222700.1  80 FSCNYCQRKFYSSQALGGHQNAH 102
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-676107No hitNo description
PROSITE profilePS5015711.42780107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEPPRSSEPS LSETSTVNSV SNGLKDDDNY DLVLDLSLSN KDDSKPELNL IECFKVTVSS  60
DDHQDCLGTP QGNETEPRVF SCNYCQRKFY SSQALGGHQN AHKRERTLAK RGQQRVVVGV  120
GGDGDGGSGG GASFAAFGHP NTHSGRYSTM ASLPLHGSFN KSLGIQVHSM IHKPSFPSST  180
HIYGHNEWSR RPIHQTPAIG HLSMENFHVG SSTSNGTAAR FESSVRKFGP STEGMNGYWW  240
DSSVNPFNTK QDELKLDLSL KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6150651e-178JX615065.1 Gossypium hirsutum clone NBRI_GE58868 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448495.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A0D2SXD20.0A0A0D2SXD2_G
STRINGVIT_09s0002g09080.t014e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-39zinc-finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]